| Date | Time | Paper Title | Authors | Affiliation |
| Friday 10/20/2006 | 6:00pm | Registration, poster setup | ||
| Session I | ||||
| 7:00pm | Pharmacogenomics: Analyzing SNPs | Mark Ebbert, Timothy OConnor, Wesley Beckstead, Mark Clement, David McClellan | Brigham Young University | |
| 7:20 | A dense multiplexed microsatellite marker set for reliable, cost effective genotyping | Robert Kolts, Elliott Richards, Sam Asby, Will Brubaker, Edward Wilcox | Brigham Young University | |
| 7:40 | Molecular Coevolution of the Vertebrate Cytochrome c1 and Rieske Iron Sulfur Protein in the Cytochrome bc1 Complex | Kimberly Baer, David A. McClellan | Brigham Young University | |
| 8:00 | Effects of Gap Open and Gap Extension Penalties | Hyrum Carroll, Perry Ridge, Mark Clement, Quinn Snell | Brigham Young University | |
| 8:20pm | Poster Session with Pizza | |||
| Saturday 10/21/2006 | 8:00am | Registration, Continental Breakfast | ||
| 8:30am | Keynote Speaker -- High Throughput Mouse Knockouts | Wade Walke | Lexicon Genetics, Inc. | |
| Session II | ||||
| 9:30 | Computational Analysis of the Distribution of Short Repeated Motifs in Human Genomic Sequences | Abanish Singh, Nikola Stojanovic | University of Texas at Arlington | |
| 9:50 | Evolutionary selective pressure on three mitochondrial SNPs is consistent with their influence on metabolic efficiency in Pima Indians | Srikar Chamala, Wesley A. Beckstead, Mark J. Rowe, David McClellan | Brigham Young University | |
| 10:10 | Protein Interactions Extrapolated from Feline Protein Complexes | Shawn Martin, Zisu Mao, Linda Chan, Suraiya Rasheed | Sandia National Laboratories, University of Southern California | |
| 10:30 | Comparing the Performance of Several Popular Machine Learning Algorithms | Raja Loganantharaj | University of Louisiana | |
| 10:50 | Break/Poster Session | |||
| Session III | ||||
| 11:10 | Prediction of Protein Coding Regions on a Programmable VLIW Architecture | Adeel Yusuf, Dawood Khan, Shoab Khan | Centre for Advanced Studies in Engineering, Pakistan | |
| 11:30 | Conservative adjustment of permutation p-values when the number of permutations is limited | Yinglei Lai | George Washington University | |
| 11:50 | Invited Speaker - protein-DNA interactions and identification of HTH DNA-binding motifs | Changhui (Charles) Yan | Utah State University | |
| 12:10 | Lunch/Poster review | |||
| 12:40 | Keynote Speaker - The cancer Biomedical Informatics Grid (caBIG) | Lewis Frey | University of Utah | |
| Session IV | ||||
| 1:30 | Improving Performance of DNA Sequencing-by-Hybridization with Gapped-Probes via Domain Knowledge | Zong He Cai, Hon Wai Leong | National University of Singapore | |
| 1:50 | An algorithm with linear expected running time for string editing with substitutions and substring reversals | Abdullah Arslan | University of Vermont | |
| 2:10 | On Predicting Secondary Structure Transition | Raja Loganantharaj, Vivek Philip | University of Louisiana | |
| 2:30 | Invited Speaker - Protein folding on the hexagonal lattice in the HP model | Minghui Jiang | Utah State University | |
| 2:50 | Best Student Paper Award - Concluding Remarks | |||
| 3:00 | Leave for Airport to avoid football game traffic! |
| Paper Title | Authors | Affiliation |
| SAP (Sequence Alignment Based Gene Prediction): A fast and novel tool for gene prediction | Charu Smita, Ramesh Joshi | IIT Roorkee, India |
| Semantic Based Retrieval of Biomedical Literature | Raja Loganantharaj, Vardarajan Narayan | University of Louisiana |
| Preliminary Analysis of the Effects of Selection on Physicochemical Properties in the Nicotinic Acetylcholine Receptor | Richard L. Smith, Seth A. Loughmiller, David A McClellan | Brigham Young University |
| Computational Identification of Regulatory elements in Silico | Vinay Singh | J.P.University of Information Technology, India |
| HTML Table Interpretation by Sibling Page Comparison in the Molecular Biology Domain | Cui Tao, David Embley | Brigham Young University |
| Genetic Code Population Dynamics in a Simulated System of Protocells | Jerrisha Butler, Francis Uzowulu, David Digby, William Seffens | Clark Atlanta University |